STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnx1Motor neuron and pancreas homeobox 1. (314 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
 
 0.538
LOC114853505
pre-B-cell leukemia transcription factor 1.
   
 0.525
LOC114842605
pre-B-cell leukemia transcription factor 1-like.
   
 0.525
LOC114860986
pre-B-cell leukemia transcription factor 1-like.
   
 0.525
pbx3
PBX homeobox 3.
   
 0.525
LOC114844734
pre-B-cell leukemia transcription factor 1.
   
 0.525
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.473
cryaa
Crystallin alpha A.
      
 0.435
irx3
Iroquois homeobox 3.
    
 0.434
rfx4
Regulatory factor X4.
      
 0.428
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.