Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114851162Polyubiquitin-like. (92 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.968
ubxn7
UBX domain protein 7.
    
 0.952
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.947
rps6
Ribosomal protein S6.
   
 0.943
rps23
Ribosomal protein S23.
   
 0.942
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.937
rps24
Ribosomal protein S24.
   
 0.933
rpl21
Ribosomal protein L21.
   
 0.931
ENSBSLP00000004541
Ribosomal protein S25.
   
 0.930
rps3a
Ribosomal protein S3A.
   
 0.930
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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