Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114854297RGM domain family member B-like. (467 aa)    
Predicted Functional Partners:
LOC114866477
Bone morphogenetic protein receptor type-1B-like.
    
 0.933
bmpr1a
Bone morphogenetic protein receptor type 1A.
    
 0.933
bmpr1b
Bone morphogenetic protein receptor type 1B.
    
 0.933
LOC114848128
Activin receptor type-1-like.
    
 0.931
ACVR1
Activin A receptor type 1.
    
 0.931
rgmb
Repulsive guidance molecule BMP co-receptor b.
  
  
 
0.905
LOC114856882
Repulsive guidance molecule A-like.
  
  
 
0.904
dcc
DCC netrin 1 receptor.
    
 0.722
neo1
Neogenin 1.
    
 0.722
LOC114852452
Immunoglobulin superfamily DCC subclass member 4-like.
    
 0.681
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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