Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KCNA5Potassium voltage-gated channel subfamily A member 1-like. (568 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.901
rpl34
Ribosomal protein L34.
  
 0.654
rpl31
Ribosomal protein L31.
   
 0.650
rpl21
Ribosomal protein L21.
  
 0.646
rpl30
Ribosomal protein L30.
   
 0.646
rpl29
Ribosomal protein L29.
   
 0.646
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
  
  0.642
LOC114843515
Voltage-gated potassium channel subunit beta-3-like.
   
 0.637
rpl24
Ribosomal protein L24.
  
  0.637
LOC114844048
Voltage-gated potassium channel subunit beta-1-like.
   
 0.637
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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