STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hvcn1Hydrogen voltage gated channel 1. (236 aa)    
Predicted Functional Partners:
trpm2
Transient receptor potential cation channel subfamily M member 2.
     
 0.621
scn3b
Sodium voltage-gated channel beta subunit 3.
     
 0.598
LOC114846088
Serine/threonine-protein phosphatase alpha-2 isoform-like.
 
  
 0.594
LOC114860657
Serine/threonine-protein phosphatase alpha-2 isoform-like.
 
  
 0.593
ppp1cc
Protein phosphatase 1 catalytic subunit gamma.
 
  
 0.593
scn2b
Sodium voltage-gated channel beta subunit 2.
     
 0.592
LOC114849913
Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like.
 
  
 0.582
LOC114851351
Serine/threonine-protein phosphatase PP1-beta catalytic subunit.
 
  
 0.582
ENSBSLP00000035572
annotation not available
 
  
 0.580
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
    
 
 0.536
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.