STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd27Ankyrin repeat domain 27. (1137 aa)    
Predicted Functional Partners:
vamp7
Vesicle associated membrane protein 7.
    
 0.950
vps29
VPS29 retromer complex component.
   
 0.932
rab21
RAB21, member RAS oncogene family.
   
 0.901
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.873
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.873
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.717
zfand4
Zinc finger AN1-type containing 4.
    
 0.714
ENSBSLP00000037601
Ubiquitin B.
    
 0.710
vps35
VPS35 retromer complex component.
   
 0.706
LOC114848004
Ras-related protein Rab-32-like.
    
 
 0.702
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.