STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114862208D-amino-acid oxidase-like. (364 aa)    
Predicted Functional Partners:
sardh
Sarcosine dehydrogenase.
  
 0.954
LOC114864912
Malate synthase-like.
  
 
 0.947
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.946
dmgdh
Dimethylglycine dehydrogenase.
  
 0.939
LOC114853733
Serine--pyruvate aminotransferase, mitochondrial-like.
  
 
 0.906
LOC114844733
Serine--pyruvate aminotransferase-like.
  
 
 0.906
agxt2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.896
amt
Aminomethyltransferase.
  
 0.891
l3hypdh
trans-L-3-hydroxyproline dehydratase.
    
 0.887
LOC114867651
Apoptosis-inducing factor 3-like.
  
 0.880
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.