STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd3Chromodomain helicase DNA binding protein 3. (2123 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.951
LOC114851763
Histone-binding protein RBBP7.
   
 0.899
rbbp4
RB binding protein 4, chromatin remodeling factor.
   
 0.899
LOC114853040
methyl-CpG-binding domain protein 3-like.
    
 0.869
LOC114867324
methyl-CpG-binding domain protein 2-like.
    
 0.869
ENSBSLP00000032114
annotation not available
    
 0.868
ENSBSLP00000047246
annotation not available
    
 0.868
fancm
FA complementation group M.
   
 0.853
rcor2
REST corepressor 2.
    
 0.844
mta2
Metastasis associated 1 family member 2.
   
 0.844
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.