Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC114845827Zinc finger protein OZF-like. (508 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.569
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
    
 0.541
atm
ATM serine/threonine kinase.
    
 0.474
SPOP
Speckle-type POZ protein.
   
  0.445
spopl
Speckle type BTB/POZ protein like.
   
  0.445
mrps11
Mitochondrial ribosomal protein S11.
    
  0.412
terf1
Telomeric repeat binding factor 1.
    
  0.404
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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