STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
svipSmall VCP interacting protein. (85 aa)    
Predicted Functional Partners:
LOC114851360
Transitional endoplasmic reticulum ATPase-like.
    
 0.930
vcp
Valosin containing protein.
    
 0.930
ubxn2a
UBX domain protein 2A.
     
 0.921
SPATA5
Spermatogenesis associated 5.
    
 0.905
spata5l1
Spermatogenesis associated 5 like 1.
    
 0.905
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.891
nsfl1c
NSFL1 cofactor.
     
 0.882
ENSBSLP00000041366
FA core complex associated protein 100.
    
 0.872
ubxn1
UBX domain protein 1.
     
 0.870
ubxn6
UBX domain protein 6.
    
 0.863
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.