STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def6DEF6 guanine nucleotide exchange factor. (617 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.869
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.802
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
    
 0.682
ENSBSLP00000048337
annotation not available
    
  0.673
LOC114866026
Regulating synaptic membrane exocytosis protein 2-like.
    
  0.637
RIMS2
Regulating synaptic membrane exocytosis 2.
    
  0.637
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.605
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.602
tep1
Telomerase associated protein 1.
    
 0.592
kdm6b
Lysine demethylase 6B.
    
 0.581
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.