STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnjCyclin J. (368 aa)    
Predicted Functional Partners:
cdc6
Cell division cycle 6.
   
 0.937
skp2
S-phase kinase associated protein 2.
   
 0.897
LOC114854042
Cyclin-dependent kinases regulatory subunit 1-like.
   
 0.882
skp1
S-phase kinase associated protein 1.
    
 0.882
LOC114866276
Cyclin-dependent kinases regulatory subunit 1.
   
 0.882
cdt1
Chromatin licensing and DNA replication factor 1.
   
 0.873
anapc4
Anaphase promoting complex subunit 4.
    
 0.860
ube2c
Ubiquitin conjugating enzyme E2 C.
   
 0.847
anapc1
Anaphase promoting complex subunit 1.
    
 0.846
cdc27
Cell division cycle 27.
    
 0.845
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.