samd14 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

samd14

Sterile alpha motif domain containing 14. (415 aa)

Predicted Functional Partners:

PPP1R9B

0.927

LOC114845479

0.927

SAMD5

0.686

samd7

0.670

LOC114859017

0.630

bloc1s1

0.628

LOC114862965

0.557

klhl26

0.454

lrpap1

0.447

st3gal3

0.409

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114845479	samd14	ENSBSLP00000020854	ENSBSLP00000004772	Neurabin-2-like.	Sterile alpha motif domain containing 14.	0.927
LOC114859017	SAMD5	ENSBSLP00000014815	ENSBSLP00000050320	Sterile alpha motif domain-containing protein 10-like.	Sterile alpha motif domain containing 5.	0.672
LOC114859017	samd14	ENSBSLP00000014815	ENSBSLP00000004772	Sterile alpha motif domain-containing protein 10-like.	Sterile alpha motif domain containing 14.	0.630
LOC114859017	samd7	ENSBSLP00000014815	ENSBSLP00000057005	Sterile alpha motif domain-containing protein 10-like.	Sterile alpha motif domain containing 7.	0.410
LOC114862965	klhl26	ENSBSLP00000018172	ENSBSLP00000022275	Protein RIC-3-like.	Kelch like family member 26.	0.554
LOC114862965	samd14	ENSBSLP00000018172	ENSBSLP00000004772	Protein RIC-3-like.	Sterile alpha motif domain containing 14.	0.557
PPP1R9B	samd14	ENSBSLP00000005261	ENSBSLP00000004772	Neurabin-2-like.	Sterile alpha motif domain containing 14.	0.927
SAMD5	LOC114859017	ENSBSLP00000050320	ENSBSLP00000014815	Sterile alpha motif domain containing 5.	Sterile alpha motif domain-containing protein 10-like.	0.672
SAMD5	samd14	ENSBSLP00000050320	ENSBSLP00000004772	Sterile alpha motif domain containing 5.	Sterile alpha motif domain containing 14.	0.686
SAMD5	samd7	ENSBSLP00000050320	ENSBSLP00000057005	Sterile alpha motif domain containing 5.	Sterile alpha motif domain containing 7.	0.539
bloc1s1	samd14	ENSBSLP00000055477	ENSBSLP00000004772	Biogenesis of lysosomal organelles complex 1 subunit 1.	Sterile alpha motif domain containing 14.	0.628
klhl26	LOC114862965	ENSBSLP00000022275	ENSBSLP00000018172	Kelch like family member 26.	Protein RIC-3-like.	0.554
klhl26	samd14	ENSBSLP00000022275	ENSBSLP00000004772	Kelch like family member 26.	Sterile alpha motif domain containing 14.	0.454
lrpap1	samd14	ENSBSLP00000004358	ENSBSLP00000004772	LDL receptor related protein associated protein 1.	Sterile alpha motif domain containing 14.	0.447
samd14	LOC114845479	ENSBSLP00000004772	ENSBSLP00000020854	Sterile alpha motif domain containing 14.	Neurabin-2-like.	0.927
samd14	LOC114859017	ENSBSLP00000004772	ENSBSLP00000014815	Sterile alpha motif domain containing 14.	Sterile alpha motif domain-containing protein 10-like.	0.630
samd14	LOC114862965	ENSBSLP00000004772	ENSBSLP00000018172	Sterile alpha motif domain containing 14.	Protein RIC-3-like.	0.557
samd14	PPP1R9B	ENSBSLP00000004772	ENSBSLP00000005261	Sterile alpha motif domain containing 14.	Neurabin-2-like.	0.927
samd14	SAMD5	ENSBSLP00000004772	ENSBSLP00000050320	Sterile alpha motif domain containing 14.	Sterile alpha motif domain containing 5.	0.686
samd14	bloc1s1	ENSBSLP00000004772	ENSBSLP00000055477	Sterile alpha motif domain containing 14.	Biogenesis of lysosomal organelles complex 1 subunit 1.	0.628