STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853294E3 ubiquitin-protein ligase RNF31-like. (1101 aa)    
Predicted Functional Partners:
sharpin
SHANK associated RH domain interactor.
    
 0.984
LOC114854200
ranBP-type and C3HC4-type zinc finger-containing protein 1.
   
 0.980
rbck1
RANBP2-type and C3HC4-type zinc finger containing 1.
   
 0.980
LOC114853599
Uncharacterized LOC114853599.
    
 0.975
tnfrsf1a
TNF receptor superfamily member 1A.
    
 0.954
rps27a
Ribosomal protein S27a.
   
 0.936
ENSBSLP00000037601
Ubiquitin B.
   
 0.936
ripk1
Receptor interacting serine/threonine kinase 1.
    
 0.906
LOC114869611
Inhibitor of apoptosis protein-like.
    
 0.878
xiap
X-linked inhibitor of apoptosis.
    
 0.876
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.