STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114865283Digestive cysteine proteinase 2-like. (551 aa)    
Predicted Functional Partners:
plpp5
Phospholipid phosphatase 5.
    
  0.663
plpp4
Phospholipid phosphatase 4.
    
  0.663
LOC114865816
Progranulin-like.
   
 0.619
LOC114859959
Uncharacterized LOC114859959.
   
 0.619
grn
Granulin precursor.
   
 0.619
cd74
CD74 molecule.
   
 0.589
rps14
Ribosomal protein S14.
   
 0.589
ccdc115
Coiled-coil domain containing 115.
    
  0.586
apaf1
Apoptotic peptidase activating factor 1.
   
 0.551
LOC114864300
Cathepsin F-like.
   
0.541
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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