vstm2b protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vstm2b

V-set and transmembrane domain containing 2B. (284 aa)

Predicted Functional Partners:

ENSBSLP00000008470

0.540

LMCD1

0.534

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000008470	LMCD1	ENSBSLP00000008470	ENSBSLP00000006453	Tumor necrosis factor, alpha-induced protein 8-like 3.	LIM and cysteine rich domains 1.	0.529
ENSBSLP00000008470	vstm2b	ENSBSLP00000008470	ENSBSLP00000004983	Tumor necrosis factor, alpha-induced protein 8-like 3.	V-set and transmembrane domain containing 2B.	0.540
LMCD1	ENSBSLP00000008470	ENSBSLP00000006453	ENSBSLP00000008470	LIM and cysteine rich domains 1.	Tumor necrosis factor, alpha-induced protein 8-like 3.	0.529
LMCD1	vstm2b	ENSBSLP00000006453	ENSBSLP00000004983	LIM and cysteine rich domains 1.	V-set and transmembrane domain containing 2B.	0.534
vstm2b	ENSBSLP00000008470	ENSBSLP00000004983	ENSBSLP00000008470	V-set and transmembrane domain containing 2B.	Tumor necrosis factor, alpha-induced protein 8-like 3.	0.540
vstm2b	LMCD1	ENSBSLP00000004983	ENSBSLP00000006453	V-set and transmembrane domain containing 2B.	LIM and cysteine rich domains 1.	0.534