STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (286 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.999
bysl
Bystin like.
   
 0.994
tsr1
TSR1 ribosome maturation factor.
   
 0.993
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.990
trmt61a
tRNA methyltransferase 61A.
  
 0.986
ltv1
LTV1 ribosome biogenesis factor.
   
 0.983
ENSBSLP00000026024
LTV1 ribosome biogenesis factor.
   
 0.983
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
   
 
 0.982
mettl1
Methyltransferase like 1.
   
 0.981
trmt11
tRNA methyltransferase 11 homolog.
   
 0.981
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.