Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fgf19Fibroblast growth factor 19. (208 aa)    
Predicted Functional Partners:
fgfr2
Fibroblast growth factor receptor 2.
    
 0.941
LOC114848555
Fibroblast growth factor receptor 3.
    
 0.941
LOC114869627
Fibroblast growth factor receptor 4-like.
    
 0.941
LOC114861756
Fibroblast growth factor receptor 1-A-like.
    
 0.941
LOC114862982
Fibroblast growth factor 23-like.
     
 0.900
ret
Ret proto-oncogene.
    
 0.893
LOC114863958
Putative fibroblast growth factor 1.
   
 
 0.881
LOC114858492
Bile acid receptor-like.
    
 
 0.876
nr1h4
Nuclear receptor subfamily 1 group H member 4.
    
 
 0.876
flt3
Fms related tyrosine kinase 3.
    
 0.873
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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