STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114845862Desmin-like. (548 aa)    
Predicted Functional Partners:
LOC114869172
Barrier-to-autointegration factor.
   
 0.746
LOC114842006
Barrier-to-autointegration factor-like.
   
 0.746
LOC114859472
Lamina-associated polypeptide 2, isoforms beta/gamma-like.
    
 0.736
sun1
Sad1 and UNC84 domain containing 1.
    
 0.654
LOC114855633
RNA-binding protein 39-like.
    
 0.593
lemd3
LEM domain containing 3.
    
 0.593
LOC114858301
RNA-binding protein 39-like.
    
 0.593
LOC114844036
Caspase-8-like.
    
 0.579
LOC114847689
Caspase-8-like.
    
 0.579
LOC114851280
H-2 class II histocompatibility antigen, A-U alpha chain-like.
    
   0.576
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.