STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
supt6hSPT6 homolog, histone chaperone and transcription elongation factor. (1750 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
LOC114867885
Protein IWS1 homolog.
   
 0.999
supt5h
SPT5 homolog, DSIF elongation factor subunit.
   
 0.999
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
  
 0.998
ssrp1
Structure specific recognition protein 1.
   
 0.998
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.997
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.997
cdc73
Cell division cycle 73.
   
 0.997
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
polr2a
RNA polymerase II subunit A.
   
 0.996
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.