STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114869835Ras-related protein Rab-34-like. (252 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.879
vps52
VPS52 subunit of GARP complex.
    
 0.822
LOC114862049
Rab GDP dissociation inhibitor beta-like.
   
 0.817
LOC114855822
Rab GDP dissociation inhibitor beta-like.
   
 0.817
LOC114858369
Rab GDP dissociation inhibitor alpha.
   
 0.817
cog6
Component of oligomeric golgi complex 6.
   
 0.810
vps53
VPS53 subunit of GARP complex.
    
 0.800
cog8
Component of oligomeric golgi complex 8.
    
 0.797
LOC114856920
Uncharacterized LOC114856920.
   
 0.766
rgp1
RGP1 homolog, RAB6A GEF complex partner 1.
    
 0.766
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.