STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d19TBC1 domain family member 19. (525 aa)    
Predicted Functional Partners:
ttll1
Tubulin tyrosine ligase like 1.
   
 
 0.861
nicn1
Nicolin 1.
    
   0.850
lrrc49
Leucine rich repeat containing 49.
   
   0.692
ttl
Tubulin tyrosine ligase.
   
 
 0.665
TBC1D13
TBC1 domain family member 13.
      
 0.530
ttll10
Tubulin tyrosine ligase like 10.
   
 
 0.512
LOC114854560
TBC1 domain family member 7-like.
      
 0.485
CCKAR
Cholecystokinin A receptor.
      
 0.461
c6h11orf49
Chromosome 6 C11orf49 homolog.
   
   0.461
wdfy3
WD repeat and FYVE domain containing 3.
      
 0.440
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.