STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114860431Carbonic anhydrase-related protein 10-like. (328 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.676
rpl11
Ribosomal protein L11.
    
 
 0.621
rrs1
Ribosome biogenesis regulator 1 homolog.
   
 
 0.619
RPL5
Ribosomal protein L5.
    
 
 0.601
RPL5-2
60S ribosomal protein L5-like.
    
 
 0.601
utp18
UTP18 small subunit processome component.
   
  
 0.526
grwd1
Glutamate rich WD repeat containing 1.
   
  
 0.514
rbm34
RNA binding motif protein 34.
   
   0.469
nle1
Notchless homolog 1.
   
  
 0.455
wdr43
WD repeat domain 43.
   
    0.452
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.