STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114866915chromodomain-helicase-DNA-binding protein 1-like. (1787 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.958
ruvbl1
RuvB like AAA ATPase 1.
    
 0.868
ruvbl2
RuvB like AAA ATPase 2.
   
 0.864
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.844
trrap
Transformation/transcription domain associated protein.
   
 0.839
ino80c
INO80 complex subunit C.
    
 0.829
polr2c
RNA polymerase II subunit C.
   
 0.822
ssrp1
Structure specific recognition protein 1.
    
 0.817
mphosph8
M-phase phosphoprotein 8.
   
 0.796
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.795
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.