Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rprd1bRegulation of nuclear pre-mRNA domain containing 1B. (328 aa)    
Predicted Functional Partners:
rpap2
RNA polymerase II associated protein 2.
   
 0.965
polr2a
RNA polymerase II subunit A.
    
 0.952
polr2d
RNA polymerase II subunit D.
    
  0.937
POLR2E
RNA polymerase II subunit E.
    
  0.936
polr2c
RNA polymerase II subunit C.
    
 0.935
polr2b
RNA polymerase II subunit B.
   
 0.933
polr2i
RNA polymerase II subunit I.
    
 0.932
polr2g
RNA polymerase II subunit G.
    
  0.931
polr2f
RNA polymerase II subunit F.
    
  0.931
polr2l
RNA polymerase II subunit L.
    
  0.928
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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