Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
patz1POZ/BTB and AT hook containing zinc finger 1. (645 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.569
ahdc1
AT-hook DNA binding motif containing 1.
      
 0.569
LOC114847215
Thioredoxin domain-containing protein 3 homolog.
    
 0.541
rcor2
REST corepressor 2.
   
 0.527
mta3
Metastasis associated 1 family member 3.
    
 0.497
mrpl48
Mitochondrial ribosomal protein L48.
    
 
 0.478
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 0.461
bbx
BBX high mobility group box domain containing.
    
 
 0.454
phf21a
PHD finger protein 21A.
  
 
  0.449
terf1
Telomeric repeat binding factor 1.
    
 0.447
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.