Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cltrnCollectrin, amino acid transport regulator. (213 aa)    
Predicted Functional Partners:
LOC114870387
Alpha-1-antitrypsin-like protein GS55-MS.
    
 0.987
agtr1
Angiotensin II receptor type 1.
    
 
 0.937
hspa5
Heat shock protein family A (Hsp70) member 5.
    
 
 0.866
slc6a18
Solute carrier family 6 member 18.
   
 
 0.811
SLC6A19
Sodium-dependent neutral amino acid transporter B(0)AT1-like.
   
 
 0.811
SLC6A19-2
Sodium-dependent neutral amino acid transporter B(0)AT1-like.
   
 
 0.811
SLC6A19-3
Sodium-dependent neutral amino acid transporter B(0)AT1-like.
   
 
 0.811
ENSBSLP00000054176
Solute carrier family 6 member 19b.
   
 
 0.811
SNX27
Sorting nexin 27.
    
 
 0.808
LOC114865403
Sorting nexin-27-like.
    
 
 0.808
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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