Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clrn1Clarin 1. (274 aa)    
Predicted Functional Partners:
ush1c
USH1 protein network component harmonin.
      
 0.830
LOC114870437
PDZ domain-containing protein 7-like.
      
 0.738
whrn
Whirlin.
      
 0.735
cdh23
Cadherin related 23.
   
  
 0.728
ENSBSLP00000031799
Myosin VIIAb.
      
 0.646
hars1
histidyl-tRNA synthetase 1.
      
 0.592
LOC114861120
Usher syndrome type-1G protein homolog.
      
 0.588
LOC114845623
Usher syndrome type-1G protein homolog.
      
 0.588
cdhr2
Cadherin related family member 2.
   
  
 0.574
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
      
 0.536
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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