STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmed9Transmembrane p24 trafficking protein 9. (223 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
0.993
ENSBSLP00000001947
annotation not available
   
0.975
tmed2
Transmembrane p24 trafficking protein 2.
   
0.975
LOC114862140
Transmembrane emp24 domain-containing protein 7-like.
   
0.924
LOC114845051
TIR domain-containing adapter molecule 1-like.
   
 0.924
surf4
Surfeit 4.
   
 0.900
LOC114844455
Vesicle-trafficking protein SEC22b-like.
   
 0.784
sec22c
SEC22 homolog C, vesicle trafficking protein.
   
 0.764
sec22a
SEC22 homolog A, vesicle trafficking protein.
   
 0.764
copb1
Coatomer protein complex subunit beta 1.
   
 0.761
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.