STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c8h11orf88Chromosome 8 C11orf88 homolog. (156 aa)    
Predicted Functional Partners:
gtf2b
General transcription factor IIB.
  
 0.956
LOC114869055
Transcription initiation factor TFIID subunit 9-like.
    
 0.952
taf10
TATA-box binding protein associated factor 10.
    
 0.952
taf1
TATA-box binding protein associated factor 1.
    
 0.952
taf7l
TATA-box binding protein associated factor 7 like.
    
 0.952
taf12
TATA-box binding protein associated factor 12.
    
 0.952
taf2
TATA-box binding protein associated factor 2.
    
 0.952
taf11
TATA-box binding protein associated factor 11.
   
 0.950
taf13
TATA-box binding protein associated factor 13.
   
 0.950
gtf2a2
General transcription factor IIA subunit 2.
   
 0.948
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.