STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855534Retinoic acid receptor gamma-A-like. (533 aa)    
Predicted Functional Partners:
LOC114853923
Retinoic acid receptor RXR-gamma-B-like.
   
0.812
med1
Mediator complex subunit 1.
    
 0.805
ncor2
Nuclear receptor corepressor 2.
    
 0.793
ncor1
Nuclear receptor corepressor 1.
    
 0.793
zbtb16
Zinc finger and BTB domain containing 16.
    
 0.756
RXRB
Retinoic acid receptor RXR-beta-A.
   
0.733
rxra
Retinoid X receptor alpha.
   
0.733
LOC114842470
Retinoic acid receptor RXR-beta-A-like.
   
0.733
spi1
Spi-1 proto-oncogene.
    
 0.718
nrip1
Nuclear receptor interacting protein 1.
    
 0.686
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.