STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain containing 47. (508 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
    
  0.965
rpl9
Ribosomal protein L9.
    
  0.964
tmco1
Transmembrane and coiled-coil domains 1.
    
 
 0.952
ncln
Nicalin.
    
 
 0.950
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
    
 0.942
tmem147
Transmembrane protein 147.
    
 
 0.941
cct2
Chaperonin containing TCP1 subunit 2.
     
 0.940
bag3
BCL2 associated athanogene 3.
    
  0.933
cct5
Chaperonin containing TCP1 subunit 5.
     
 0.933
pih1d2
PIH1 domain containing 2.
    
  0.933
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.