STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c13h19orf54Chromosome 13 C19orf54 homolog. (316 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.997
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
   
 0.997
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.996
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.996
lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.993
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.993
ENSBSLP00000050458
Small nuclear ribonucleoprotein D3 polypeptide, like.
   
 0.992
lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.991
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.991
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.