STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sycp3Synaptonemal complex protein 3. (247 aa)    
Predicted Functional Partners:
ogfod1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
   
 
 0.965
syce1
Synaptonemal complex central element protein 1.
   
 0.944
rec8
REC8 meiotic recombination protein.
    
 0.920
syce3
Synaptonemal complex central element protein 3.
    
 0.920
ENSBSLP00000034562
BRCA2 DNA repair associated.
    
 0.919
LOC114859418
somatostatin-1B-like.
      
 0.896
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.893
zbtb16
Zinc finger and BTB domain containing 16.
    
 
 0.886
rps23
Ribosomal protein S23.
   
 0.883
dazl
Deleted in azoospermia like.
    
 
 0.870
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.