Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rad23aRAD23 homolog A, nucleotide excision repair protein. (367 aa)    
Predicted Functional Partners:
xpc
XPC complex subunit, DNA damage recognition and repair factor.
   
 0.983
ngly1
N-glycanase 1.
    
 0.977
xpa
XPA, DNA damage recognition and repair factor.
    
 0.974
psmc1
Proteasome 26S subunit, ATPase 1.
   
 0.969
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.968
atxn3
Ataxin 3.
    
 0.962
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.951
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 0.948
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.948
psmd2
Proteasome 26S subunit, non-ATPase 2.
   
 0.945
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.