STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pabpc1poly(A) binding protein cytoplasmic 1. (635 aa)    
Predicted Functional Partners:
pan3
poly(A) specific ribonuclease subunit PAN3.
    
 0.954
paip1
poly(A) binding protein interacting protein 1.
   
 0.945
pan2
poly(A) specific ribonuclease subunit PAN2.
    
 0.943
LOC114849329
Eukaryotic initiation factor 4A-I.
 
 
 0.905
eif4a2
Eukaryotic translation initiation factor 4A2.
 
 
 0.905
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.902
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.892
LOC114848177
Eukaryotic translation initiation factor 4E-1A.
   
 0.876
LOC114864471
Eukaryotic translation initiation factor 4E-1A-like.
   
 0.876
LOC114841921
Eukaryotic translation initiation factor 4E-like.
   
 0.862
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.