STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ambra1Autophagy and beclin 1 regulator 1. (1371 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 0.991
becn1
Beclin 1.
    
 0.977
traf6
TNF receptor associated factor 6.
    
 0.948
DCAF7
DDB1 and CUL4 associated factor 7.
    
  0.943
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
   
 0.943
dcaf10
DDB1 and CUL4 associated factor 10.
    
  0.941
cop1
COP1 E3 ubiquitin ligase.
    
  0.940
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.940
pik3r4
Phosphoinositide-3-kinase regulatory subunit 4.
   
 
 0.939
dcaf5
DDB1 and CUL4 associated factor 5.
   
  0.938
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.