Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nudt9Nudix hydrolase 9. (352 aa)    
Predicted Functional Partners:
nudt5
Nudix hydrolase 5.
    
 0.979
prps2
Phosphoribosyl pyrophosphate synthetase 2.
     
 0.924
LOC114865087
Ribose-phosphate pyrophosphokinase 1.
     
 0.924
LOC114846319
Transient receptor potential cation channel subfamily M member 4-like.
 
   
 0.912
pgm2
Phosphoglucomutase 2.
     
 0.908
LOC114860390
Transient receptor potential cation channel subfamily M member 4-like.
 
   
 0.904
LOC114844395
Phosphoglucomutase-1-like.
     
 0.901
adprm
ADP-ribose/CDP-alcohol diphosphatase, manganese dependent.
     
  0.900
trpm5
Transient receptor potential cation channel subfamily M member 5.
 
   
 0.871
LOC114857327
Transient receptor potential cation channel subfamily M member 1-like.
 
   
 0.861
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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