STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114864648Ras-related protein Rab-33B-like. (242 aa)    
Predicted Functional Partners:
atg16l1
Autophagy related 16 like 1.
    
 0.983
LOC114867572
Autophagy-related protein 16-2-like.
    
 0.983
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.872
trappc2
Trafficking protein particle complex 2.
    
 0.865
trappc1
Trafficking protein particle complex 1.
    
 0.858
trappc4
Trafficking protein particle complex 4.
    
 0.854
LOC114862862
Ras-related protein Rab-33B-like.
  
  
 
0.844
LOC114846860
Ras-related protein Rab-33B-like.
  
  
 
0.842
trappc8
Trafficking protein particle complex 8.
    
 0.838
trappc3
Trafficking protein particle complex 3.
    
 0.817
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.