STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsen54tRNA splicing endonuclease subunit 54. (512 aa)    
Predicted Functional Partners:
clp1
Cleavage and polyadenylation factor I subunit 1.
    
 0.976
tsen15
tRNA splicing endonuclease subunit 15.
    
 0.965
kri1
KRI1 homolog.
   
 
  0.934
pop4
POP4 homolog, ribonuclease P/MRP subunit.
   
 
  0.930
pop5
POP5 homolog, ribonuclease P/MRP subunit.
   
 
  0.928
dicer1
Dicer 1, ribonuclease III.
   
 
  0.902
drosha
Drosha ribonuclease III.
   
 
  0.882
DXO
Decapping exoribonuclease.
   
 
  0.876
serac1
Serine active site containing 1.
   
 
  0.858
ENSBSLP00000053527
CREB/ATF bZIP transcription factor.
   
 
  0.823
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.