STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg10Autophagy related 10. (238 aa)    
Predicted Functional Partners:
atg12
Autophagy related 12.
    
 0.966
atg7
Autophagy related 7.
   
 0.944
atg5
Autophagy related 5.
    
 0.858
LOC114856283
NEDD8-activating enzyme E1 catalytic subunit-like.
   
 0.649
UBA3
NEDD8-activating enzyme E1 catalytic subunit.
   
 0.649
nae1
NEDD8 activating enzyme E1 subunit 1.
   
 0.640
sae1
SUMO1 activating enzyme subunit 1.
   
 0.640
uba5
Ubiquitin like modifier activating enzyme 5.
   
 0.640
LOC114854994
Ubiquitin-like modifier-activating enzyme 1.
   
 0.640
uba2
Ubiquitin like modifier activating enzyme 2.
   
 0.640
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.