pop4 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pop4

POP4 homolog, ribonuclease P/MRP subunit. (221 aa)

Predicted Functional Partners:

LOC114853806

0.999

pop5

0.999

pop1

0.999

ENSBSLP00000053027

0.998

LOC114851929

0.997

rpp40

0.997

kri1

0.993

snu13

0.993

LOC114843629

0.984

RPP25

0.984

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000053027	LOC114843629	ENSBSLP00000053027	ENSBSLP00000019277	annotation not available	Ribonuclease P protein subunit p25-like protein.	0.977
ENSBSLP00000053027	LOC114851929	ENSBSLP00000053027	ENSBSLP00000045541	annotation not available	Ribonuclease P protein subunit p25-like protein.	0.997
ENSBSLP00000053027	LOC114853806	ENSBSLP00000053027	ENSBSLP00000037035	annotation not available	Ribonuclease P protein subunit p21-like.	0.996
ENSBSLP00000053027	RPP25	ENSBSLP00000053027	ENSBSLP00000034304	annotation not available	Ribonuclease P protein subunit p25-like protein.	0.978
ENSBSLP00000053027	kri1	ENSBSLP00000053027	ENSBSLP00000014270	annotation not available	KRI1 homolog.	0.879
ENSBSLP00000053027	pop1	ENSBSLP00000053027	ENSBSLP00000052852	annotation not available	POP1 homolog, ribonuclease P/MRP subunit.	0.990
ENSBSLP00000053027	pop4	ENSBSLP00000053027	ENSBSLP00000009792	annotation not available	POP4 homolog, ribonuclease P/MRP subunit.	0.998
ENSBSLP00000053027	pop5	ENSBSLP00000053027	ENSBSLP00000052266	annotation not available	POP5 homolog, ribonuclease P/MRP subunit.	0.996
ENSBSLP00000053027	rpp40	ENSBSLP00000053027	ENSBSLP00000048090	annotation not available	Ribonuclease P/MRP subunit p40.	0.989
ENSBSLP00000053027	snu13	ENSBSLP00000053027	ENSBSLP00000043056	annotation not available	Small nuclear ribonucleoprotein 13.	0.929
LOC114843629	ENSBSLP00000053027	ENSBSLP00000019277	ENSBSLP00000053027	Ribonuclease P protein subunit p25-like protein.	annotation not available	0.977
LOC114843629	LOC114851929	ENSBSLP00000019277	ENSBSLP00000045541	Ribonuclease P protein subunit p25-like protein.	Ribonuclease P protein subunit p25-like protein.	0.913
LOC114843629	LOC114853806	ENSBSLP00000019277	ENSBSLP00000037035	Ribonuclease P protein subunit p25-like protein.	Ribonuclease P protein subunit p21-like.	0.983
LOC114843629	RPP25	ENSBSLP00000019277	ENSBSLP00000034304	Ribonuclease P protein subunit p25-like protein.	Ribonuclease P protein subunit p25-like protein.	0.851
LOC114843629	pop1	ENSBSLP00000019277	ENSBSLP00000052852	Ribonuclease P protein subunit p25-like protein.	POP1 homolog, ribonuclease P/MRP subunit.	0.976
LOC114843629	pop4	ENSBSLP00000019277	ENSBSLP00000009792	Ribonuclease P protein subunit p25-like protein.	POP4 homolog, ribonuclease P/MRP subunit.	0.984
LOC114843629	pop5	ENSBSLP00000019277	ENSBSLP00000052266	Ribonuclease P protein subunit p25-like protein.	POP5 homolog, ribonuclease P/MRP subunit.	0.985
LOC114843629	rpp40	ENSBSLP00000019277	ENSBSLP00000048090	Ribonuclease P protein subunit p25-like protein.	Ribonuclease P/MRP subunit p40.	0.902
LOC114843629	snu13	ENSBSLP00000019277	ENSBSLP00000043056	Ribonuclease P protein subunit p25-like protein.	Small nuclear ribonucleoprotein 13.	0.976
LOC114851929	ENSBSLP00000053027	ENSBSLP00000045541	ENSBSLP00000053027	Ribonuclease P protein subunit p25-like protein.	annotation not available	0.997