Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
neurog1Neurogenin 1. (201 aa)    
Predicted Functional Partners:
INSM1
INSM transcriptional repressor 1.
   
 0.781
INSM2
INSM transcriptional repressor 2.
   
 0.781
LOC114848110
Insulinoma-associated protein 1b-like.
   
 0.781
ascl1
Achaete-scute family bHLH transcription factor 1.
   
 
 0.770
hes1
Hes family bHLH transcription factor 1.
    
 0.751
LOC114848434
Homeobox protein Nkx-2.2a.
   
 0.734
elavl3
ELAV like RNA binding protein 3.
   
  
 0.726
LOC114853406
Transcription factor E2-alpha-like.
    
 
 0.694
LOC114845207
Transcription factor E2-alpha-like.
    
 
 0.694
tcf12
Transcription factor 12.
    
 
 0.694
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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