STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114862425thrombospondin-4-B-like. (958 aa)    
Predicted Functional Partners:
itgb4
Integrin subunit beta 4.
   
 0.827
itgb6
Integrin subunit beta 6.
    
 0.819
itgb5
Integrin subunit beta 5.
    
 0.819
itgb8
Integrin subunit beta 8.
    
 0.818
itgb1
Integrin subunit beta 1.
    
 0.818
cd36
CD36 molecule.
    
 0.808
ITGA7
Integrin subunit alpha 7.
    
 0.808
LOC114855880
Syndecan-4-like.
    
  0.806
itga4
Integrin subunit alpha 4.
    
 0.806
itga8
Integrin subunit alpha 8.
    
  0.806
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.