Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114849239Kinetochore-associated protein NSL1 homolog. (206 aa)    
Predicted Functional Partners:
LOC114860989
Uncharacterized LOC114860989.
   
 0.991
LOC114863967
Polyamine-modulated factor 1-like.
    
 0.976
ndc80
NDC80 kinetochore complex component.
   
 0.974
ENSBSLP00000030651
MIS12 kinetochore complex component.
    
 0.974
knl1
Kinetochore scaffold 1.
   
 0.972
spc25
SPC25 component of NDC80 kinetochore complex.
   
 0.972
nuf2
NUF2 component of NDC80 kinetochore complex.
   
 0.970
spc24
SPC24 component of NDC80 kinetochore complex.
   
 0.970
ENSBSLP00000023484
annotation not available
   
 0.955
bub1b
BUB1 mitotic checkpoint serine/threonine kinase B.
   
  0.900
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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