Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846320Synuclein-like. (133 aa)    
Predicted Functional Partners:
sncb
Synuclein beta.
   
 
 0.824
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 
 0.813
LOC114861713
Synphilin-1-like.
    
 0.756
LOC114861927
Synphilin-1-like.
    
 0.756
park7
Parkinsonism associated deglycase.
    
 
 0.733
LOC114869792
Alpha-crystallin A chain-like.
    
 
 0.729
TPPP
Tubulin polymerization promoting protein.
    
 
 0.720
LOC114865387
Apolipoprotein Eb-like.
    
 0.674
LOC114865386
Apolipoprotein Eb-like.
    
 0.674
pink1
PTEN induced kinase 1.
    
 
 0.640
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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