ENSBSLP00000010098 protein (Betta splendens)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSBSLP00000010098

annotation not available (330 aa)

Predicted Functional Partners:

LOC114847215

0.474

wdr90

0.451

ripk2

0.423

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000010098	LOC114847215	ENSBSLP00000010098	ENSBSLP00000012565	annotation not available	Thioredoxin domain-containing protein 3 homolog.	0.474
ENSBSLP00000010098	ripk2	ENSBSLP00000010098	ENSBSLP00000047387	annotation not available	Receptor interacting serine/threonine kinase 2.	0.423
ENSBSLP00000010098	wdr90	ENSBSLP00000010098	ENSBSLP00000039384	annotation not available	WD repeat domain 90.	0.451
LOC114847215	ENSBSLP00000010098	ENSBSLP00000012565	ENSBSLP00000010098	Thioredoxin domain-containing protein 3 homolog.	annotation not available	0.474
LOC114847215	wdr90	ENSBSLP00000012565	ENSBSLP00000039384	Thioredoxin domain-containing protein 3 homolog.	WD repeat domain 90.	0.957
ripk2	ENSBSLP00000010098	ENSBSLP00000047387	ENSBSLP00000010098	Receptor interacting serine/threonine kinase 2.	annotation not available	0.423
wdr90	ENSBSLP00000010098	ENSBSLP00000039384	ENSBSLP00000010098	WD repeat domain 90.	annotation not available	0.451
wdr90	LOC114847215	ENSBSLP00000039384	ENSBSLP00000012565	WD repeat domain 90.	Thioredoxin domain-containing protein 3 homolog.	0.957