Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853140Phospholipid scramblase 1-like. (235 aa)    
Predicted Functional Partners:
LOC114866670
Surfeit locus protein 1.
    
 
 0.755
clcc1
Chloride channel CLIC like 1.
    
 
 0.755
pum2
Pumilio RNA binding family member 2.
    
 
 0.660
pum1
Pumilio RNA binding family member 1.
    
 
 0.660
LOC114853558
Zinc finger protein ZIC 4-like.
    
 
 0.639
LOC114866050
XK-related protein 8-like.
      
 0.534
plekhn1
Pleckstrin homology domain containing N1.
    
 
 0.484
LOC114856240
Cytochrome b-c1 complex subunit 1, mitochondrial.
    
 
 0.479
pmpcb
Peptidase, mitochondrial processing beta subunit.
    
 
 0.479
LOC114842973
Uncharacterized LOC114842973.
      
 0.473
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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