Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gen1GEN1 Holliday junction 5' flap endonuclease. (892 aa)    
Predicted Functional Partners:
dna2
DNA replication helicase/nuclease 2.
   
 0.908
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.888
eme1
Essential meiotic structure-specific endonuclease 1.
   
 0.871
slx4
SLX4 structure-specific endonuclease subunit.
  
 0.856
rmi2
RecQ mediated genome instability 2.
   
 
 0.841
rad50
RAD50 double strand break repair protein.
  
 0.839
rmi1
RecQ mediated genome instability 1.
   
 
 0.835
pcna
Proliferating cell nuclear antigen.
  
 0.835
exo1
Exonuclease 1.
   
 
 0.825
ENSBSLP00000034562
BRCA2 DNA repair associated.
   
 0.817
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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