STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gen1GEN1 Holliday junction 5' flap endonuclease. (892 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen.
  
 0.970
dna2
DNA replication helicase/nuclease 2.
   
 0.925
mre11
MRE11 homolog, double strand break repair nuclease.
  
 0.919
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.906
fancm
FA complementation group M.
   
 0.901
pold2
DNA polymerase delta 2, accessory subunit.
  
 0.899
gtf2h1
General transcription factor IIH subunit 1.
    
 0.893
rad50
RAD50 double strand break repair protein.
  
 0.873
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.872
blm
BLM RecQ like helicase.
  
 0.870
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.