Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atg3Autophagy related 3. (316 aa)    
Predicted Functional Partners:
atg7
Autophagy related 7.
    
 0.999
atg12
Autophagy related 12.
    
 0.999
atg5
Autophagy related 5.
   
 0.999
atg16l1
Autophagy related 16 like 1.
   
 0.997
gabarapl2
GABA type A receptor associated protein like 2.
   
 0.997
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.997
ENSBSLP00000001361
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.996
gabarap
GABA type A receptor-associated protein.
  
 0.996
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
   
 0.996
LOC114842980
Gamma-aminobutyric acid receptor-associated protein-like 1.
  
 0.990
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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